论文标题
生物样品的深度学习虚拟组织学染色
Deep Learning-enabled Virtual Histological Staining of Biological Samples
论文作者
论文摘要
组织学染色是临床病理学和生命科学研究中组织检查的金标准,它使用色染料或荧光标签可视化组织和细胞结构,以帮助组织的显微镜评估。但是,当前的组织学染色工作流程需要乏味的样本准备步骤,专门的实验室基础设施以及训练有素的组织技术医生,使其变得昂贵,耗时且在资源有限的设置中无法访问。深度学习技术创造了新的机会,通过使用训练有素的神经网络来数字化生成组织学染色,从而彻底改变了染色方法,从而为标准化学染色方法提供了快速,成本效益且准确的替代方法。这些技术被广泛称为虚拟染色,被多个研究小组广泛探索,并证明可以成功地从无染色样品的无标签显微镜图像中产生各种类型的组织学染色。还使用类似的方法将已经染色的组织样品的图像转换为另一种类型的污渍,进行虚拟污渍转换。在这篇综述中,我们对深度学习的虚拟组织染色技术的最新研究进展提供了全面的概述。引入了基本概念和典型的虚拟染色工作流程,然后讨论了代表性作品及其技术创新。我们还分享了对这个新兴领域的未来的观点,旨在激发读者从各种科学领域的启发,以进一步扩大深度学习的虚拟组织学染色技术及其应用的范围。
Histological staining is the gold standard for tissue examination in clinical pathology and life-science research, which visualizes the tissue and cellular structures using chromatic dyes or fluorescence labels to aid the microscopic assessment of tissue. However, the current histological staining workflow requires tedious sample preparation steps, specialized laboratory infrastructure, and trained histotechnologists, making it expensive, time-consuming, and not accessible in resource-limited settings. Deep learning techniques created new opportunities to revolutionize staining methods by digitally generating histological stains using trained neural networks, providing rapid, cost-effective, and accurate alternatives to standard chemical staining methods. These techniques, broadly referred to as virtual staining, were extensively explored by multiple research groups and demonstrated to be successful in generating various types of histological stains from label-free microscopic images of unstained samples; similar approaches were also used for transforming images of an already stained tissue sample into another type of stain, performing virtual stain-to-stain transformations. In this Review, we provide a comprehensive overview of the recent research advances in deep learning-enabled virtual histological staining techniques. The basic concepts and the typical workflow of virtual staining are introduced, followed by a discussion of representative works and their technical innovations. We also share our perspectives on the future of this emerging field, aiming to inspire readers from diverse scientific fields to further expand the scope of deep learning-enabled virtual histological staining techniques and their applications.