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The recent prevalence of pretrained language models (PLMs) has dramatically shifted the paradigm of semantic parsing, where the mapping from natural language utterances to structured logical forms is now formulated as a Seq2Seq task. Despite the promising performance, previous PLM-based approaches often suffer from hallucination problems due to their negligence of the structural information contained in the sentence, which essentially constitutes the key semantics of the logical forms. Furthermore, most works treat PLM as a black box in which the generation process of the target logical form is hidden beneath the decoder modules, which greatly hinders the model's intrinsic interpretability. To address these two issues, we propose to incorporate the current PLMs with a hierarchical decoder network. By taking the first-principle structures as the semantic anchors, we propose two novel intermediate supervision tasks, namely Semantic Anchor Extraction and Semantic Anchor Alignment, for training the hierarchical decoders and probing the model intermediate representations in a self-adaptive manner alongside the fine-tuning process. We conduct intensive experiments on several semantic parsing benchmarks and demonstrate that our approach can consistently outperform the baselines. More importantly, by analyzing the intermediate representations of the hierarchical decoders, our approach also makes a huge step toward the intrinsic interpretability of PLMs in the domain of semantic parsing.