论文标题

细胞仪的可重复性:信号分析及其与不确定性定量的联系

Reproducibility in Cytometry: Signals Analysis and its Connection to Uncertainty Quantification

论文作者

Patrone, Paul N., DiSalvo, Matthew, Kearsley, Anthony J., McFadden, Geoffrey B., Cooksey, Gregory A.

论文摘要

细胞仪的信号分析仍然是一项具有挑战性的任务,对不确定性产生重大影响。常规的细胞仪假定单个测量值的特征是简单的特性,例如信号面积,宽度和高度。但是,这些方法很难区分固有的生物学变异性与仪器伪影和操作条件。结果,量化单个单元格性质的不确定性并执行诸如Doublet反卷积之类的任务是一项挑战。我们通过信号分析技术来解决这些问题,该技术将量表转换用于:(i)生物标志物表达的分开变化与流动条件和粒径引起的效果; (ii)量化与给定激光询问区域相关的可重复性; (iii)按事实估算测量值的不确定性; (iv)提取构成多重组的单元。这种方法背后的关键思想是建模可变操作条件如何变形信号形状,然后使用受约束的优化来“撤消”这些变形的测量信号;此过程的残差是可重复性的。使用最近开发的微流体细胞仪,我们证明了这些技术可以解释仪器和测量和诱导的可变性,而信号形状的残余不确定性小于2.5%,在集成区域中的残余不确定性小于1%。

Signals analysis for cytometry remains a challenging task that has a significant impact on uncertainty. Conventional cytometers assume that individual measurements are well characterized by simple properties such as the signal area, width, and height. However, these approaches have difficulty distinguishing inherent biological variability from instrument artifacts and operating conditions. As a result, it is challenging to quantify uncertainty in the properties of individual cells and perform tasks such as doublet deconvolution. We address these problems via signals analysis techniques that use scale transformations to: (I) separate variation in biomarker expression from effects due to flow conditions and particle size; (II) quantify reproducibility associated with a given laser interrogation region; (III) estimate uncertainty in measurement values on a per-event basis; and (IV) extract the singlets that make up a multiplet. The key idea behind this approach is to model how variable operating conditions deform the signal shape and then use constrained optimization to "undo" these deformations for measured signals; residuals to this process characterize reproducibility. Using a recently developed microfluidic cytometer, we demonstrate that these techniques can account for instrument and measurand induced variability with a residual uncertainty of less than 2.5% in the signal shape and less than 1% in integrated area.

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