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An alternative definition to the main frequency of an ultra-short laser pulse, named principal frequency ($ω_P$), was recently introduced in E.G. Neyra, et al. Phys. Rev. A 103, 053124 (2021), resulting in a more transparent description of the nonlinear dynamics of a system driven by this coherent source. In this work, we extend the definition of $ω_P$ incorporating the spectral phase of the pulse. This upgraded definition allow us to deal with super-oscillatory pulses as well as to characterize sub-cycle pulses with a complex spectral content. Simultaneously, we study the nonlinear interaction between a few-cycle super-oscillatory pulse with a gaseous system, analysing the spectral characteristics of the fundamental, third and fifth harmonics. Here, we make use of an \textit{ab-initio} quantum mechanical approach, supplemented with a wavelet analysis. We show that the spectral characteristics of the low-order harmonics are very well explained in terms of $ω_P$, as well as the effective bandwidth of the super-oscillatory pulse. Our findings reinforce previous results that showed an increase of the effective bandwidth in the super-oscillatory region and the possibility to generate unique frequencies by a linear synthesis. We open, thus, not only new perspectives in ultrafast optics, exploring novel pathways towards the generation of fully tunable strong and short coherent sources, but also discuss possible extensions of the concepts presented here to other wave phenomena, that can be found in acoustics, signal processing or quantum mechanics.