论文标题

土壤捕食者的结构化觅食揭示了对细菌防御的功能反应

Structured foraging of soil predators unveils functional responses to bacterial defenses

论文作者

Rossine, Fernando W., Vercelli, Gabriel, Tarnita, Corina E., Gregor, Thomas

论文摘要

捕食者及其觅食策略通常决定生态系统的结构和功能。然而,尽管这些生态系统对全球生物地球化学周期的重要性,尽管原生动物捕食者在微生物土壤生态系统中的作用仍然难以捉摸。特别是,大变形虫 - 最丰富的土壤原生动物捕食者 - 回忆土壤养分并塑造细菌群落。但是,他们的觅食策略及其作为微生物生态系统工程师的作用仍然未知。在这里,我们提出了一种多尺度方法,将微观的单细胞分析和宏观整个生态系统动力学连接起来,以暴露系统发育性广泛的觅食策略,在这种策略中,敏锐的人群自发地分配了具有快速,极化运动的细胞与缓慢,不活跃运动的细胞快速,极化运动。这种分化的运动导致细菌底物的有效菌落扩张和消耗。从这些见解中,我们构建了一个理论模型,该模型可以预测干扰对变形虫的增长率和运动如何破坏其捕食效率。这些干扰对应于不同类型的细菌防御,这使我们能够实验验证我们的预测。所有这些都认为,我们对变形虫觅食的表征鉴定了变形虫的活动性,而不是变形虫的增长,是捕食效率的核心决定因素,也是细菌防御系统的关键目标。

Predators and their foraging strategies often determine ecosystem structure and function. Yet, the role of protozoan predators in microbial soil ecosystems remains elusive despite the importance of these ecosystems to global biogeochemical cycles. In particular, amoebae -- the most abundant soil protozoan predators of bacteria -- remineralize soil nutrients and shape the bacterial community. However, their foraging strategies and their role as microbial ecosystem engineers remain unknown. Here we present a multi-scale approach, connecting microscopic single-cell analysis and macroscopic whole ecosystem dynamics, to expose a phylogenetically widespread foraging strategy, in which an amoeba population spontaneously partitions between cells with fast, polarized movement and cells with slow, unpolarized movement. Such differentiated motion gives rise to efficient colony expansion and consumption of the bacterial substrate. From these insights we construct a theoretical model that predicts how disturbances to amoeba growth rate and movement disrupt their predation efficiency. These disturbances correspond to distinct classes of bacterial defenses, which allows us to experimentally validate our predictions. All considered, our characterization of amoeba foraging identifies amoeba mobility, and not amoeba growth, as the core determinant of predation efficiency and a key target for bacterial defense systems.

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