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Vessel navigation is influenced by various factors, such as dynamic environmental factors that change over time or static features such as vessel type or depth of the ocean. These dynamic and static navigational factors impose limitations on vessels, such as long waiting times in regions outside the actual ports, and we call these waiting regions gateway ports. Identifying gateway ports and their associated features such as congestion and available utilities can enhance vessel navigation by planning on fuel optimization or saving time in cargo operation. In this paper, we propose a novel temporal graph neural network (TGNN) based port classification method to enable vessels to discover gateway ports efficiently, thus optimizing their operations. The proposed method processes vessel trajectory data to build dynamic graphs capturing spatio-temporal dependencies between a set of static and dynamic navigational features in the data, and it is evaluated in terms of port classification accuracy on a real-world data set collected from ten vessels operating in Halifax, NS, Canada. The experimental results indicate that our TGNN-based port classification method provides an f-score of 95% in classifying ports.