论文标题
将整个幻灯片映像转换为事件驱动的云基础架构
Whole Slide Image to DICOM Conversion as Event-Driven Cloud Infrastructure
论文作者
论文摘要
在数字病理学中,越来越多地采用了医学中的数字成像和通信(DICOM)规范,以促进数据标准化和互操作性。将专有文件格式有效地转换为DICOM标准格式是机构采用DICOM的关键要求,这是确保与现有扫描仪,显微镜和数据档案的兼容所必需的。在这里,我们提出了用于DICOM转换的云计算体系结构,利用托管在Google Cloud中无服务器计算环境中的事件驱动的微服务框架,以在从单个图像到机构规模数据的范围内启用有效的DICOM转换。在我们的实验中,采用基于微服务的方法大大降低了运行时,以处理相对于并行和串行处理的一批图像。这项工作展示了设计可扩展系统以实现企业级采用数字病理学工作流的重要性,并提供了使用微服务体系结构来实现有效的DICOM转换的蓝图。
The Digital Imaging and Communication in Medicine (DICOM) specification is increasingly being adopted in digital pathology to promote data standardization and interoperability. Efficient conversion of proprietary file formats into the DICOM standard format is a key requirement for institutional adoption of DICOM, necessary to ensure compatibility with existing scanners, microscopes, and data archives. Here, we present a cloud computing architecture for DICOM conversion, leveraging an event-driven microservices framework hosted in a serverless computing environment in Google Cloud to enable efficient DICOM conversion at scales ranging from individual images to institutional-scale datasets. In our experiments, employing a microservices-based approach substantially reduced runtime to process a batch of images relative to parallel and serial processing. This work demonstrates the importance of designing scalable systems for enabling enterprise-level adoption of digital pathology workflows, and provides a blueprint for using a microservice architecture to enable efficient DICOM conversion.