论文标题
具有胶质母细胞瘤后分离生存预测的胶质母细胞瘤积分的深度学习模型
A Deep Learning Model with Radiomics Analysis Integration for Glioblastoma Post-Resection Survival Prediction
论文作者
论文摘要
目的:开发一种新型的深度学习模型,该模型将放射线分析整合到用于胶质母细胞瘤(GBM)后切除后存活预测的多维特征融合工作流程中。方法:将235名具有完整手术切除的GBM患者组成,分为短期/长期生存组,生存时间阈值为1年。每位患者接受了手术前的多参数MRI检查,并且神经放射学家分割了三个肿瘤子区域。开发的模型包括三个数据源分支:在第一个放射线分支中,每个患者的456个放射线特征(RF)。在第二个深度学习分支中,使用每个单个MR模态训练了一个编码神经网络架构进行生存组预测,并将最后两个网络层的高维参数提取为深度特征(DF)。通过特征选择过程处理提取的放射线特征和深度特征,以降低每个特征空间的尺寸。在第三个分支中,收集了基于非图像的患者特异性临床特征(PSCF)。最后,将所有三个分支的数据源融合为用于生存组预测的支持向量机(SVM)执行的集成输入。在比较研究中研究了模型设计的不同策略,包括1)基于2D/3D的图像分析和2)SVM输入设计中的不同数据源组合。结果:仅使用PSCF时,该模型仅在2D和3D分析中使用RF或DF的结果就达到了0.638的预测准确性。在3D分析中,RF/PSCF的联合使用提高了准确度提高到0.681。 2D/3D分析中最准确的模型达到了最高精度0.745,不同的RF/DF/PSCF组合分别为0.69(2D)和0.71(3D)。
Purpose: To develop a novel deep-learning model that integrates radiomics analysis in a multi-dimensional feature fusion workflow for glioblastoma (GBM) post-resection survival prediction. Methods: A cohort of 235 GBM patients with complete surgical resection was divided into short-term/long-term survival groups with 1-yr survival time threshold. Each patient received a pre-surgery multi-parametric MRI exam, and three tumor subregions were segmented by neuroradiologists. The developed model comprises three data source branches: in the 1st radiomics branch, 456 radiomics features (RF) were from each patient; in the 2nd deep learning branch, an encoding neural network architecture was trained for survival group prediction using each single MR modality, and high-dimensional parameters of the last two network layers were extracted as deep features (DF). The extracted radiomics features and deep features were processed by a feature selection procedure to reduce dimension size of each feature space. In the 3rd branch, non-image-based patient-specific clinical features (PSCF) were collected. Finally, data sources from all three branches were fused as an integrated input for a supporting vector machine (SVM) execution for survival group prediction. Different strategies of model design, including 1) 2D/3D-based image analysis, and 2) different data source combinations in SVM input design, were investigated in comparison studies. Results: The model achieved 0.638 prediction accuracy when using PSCF only, which was higher than the results using RF or DF only in both 2D and 3D analysis. The joint use of RF/PSCF improved accuracy results to 0.681 in 3D analysis. The most accurate models in 2D/3D analysis reached the highest accuracy 0.745 with different combinations of RF/DF/ PSCF, and the corresponding ROC AUC results were 0.69(2D) and 0.71(3D), respectively.