论文标题

建模猪流行腹泻病毒的农场传播动力学:表征主要传输路线

Modeling between-farm transmission dynamics of porcine epidemic diarrhea virus: characterizing the dominant transmission routes

论文作者

Galvis, Jason A., Corzo, Cesar A., Prada, Joaquin M., Machado, Gustavo

论文摘要

在猪流行性腹泻病毒(PEDV)的传播动力学中,尚未完全考虑运输车辆的作用,农场之间的猪运动,靠近感染的房屋和饲料递送的作用。这对疾病控制和消除的努力有限,将基于风险的资源分配的发展限制为最相关的PEDV传播模式。在这里,我们对九种模式建模了九种模式,包括农场到农场接近(本地传播),站点之间的养猪场移动的接触网络,四个不同的交通工具的接触网络(将猪从农场到农场运送猪,猪到市场,饲料,进食和船员的车辆,饲料分布和船员的量,饲料饮食中的动物量的动物(例如,动态饮食),例如,动态饮食(例如,动物和肉类和肉类饮食)。该模型在每周的PEDV暴发中进行了时空校准。我们研究了模型性能,以识别爆发位置和在PEDV传播中的每条路线的贡献。该模型估计,母猪农场的感染中有42.7%与运输饲料的车辆有关,34.5%的感染托儿所与将猪运送到农场的车辆有关,而对于农场类型,猪的运动或当地传播都是下一条最相关的路线。另一方面,整理人员通常是通过当地传输感染的(31.4%),然后是将饲料和猪运送到农场网络的车辆。饲料成分并未显着改善模型校准指标。提出的建模框架提供了对PEDV传输动态的评估,对PEDV传播的最重要途径进行了排名,并授予猪行业有价值的信息,以将精力和资源集中在最重要的传输路线上。

The role of transportation vehicles, pig movement between farms, proximity to infected premises, and feed deliveries has not been fully considered in the dissemination dynamics of porcine epidemic diarrhea virus (PEDV). This has limited efforts for disease control and elimination restricting the development of risk-based resource allocation to the most relevant modes of PEDV dissemination. Here, we modeled nine modes of between-farm transmission pathways including farm-to-farm proximity (local transmission), contact network of pig farm movements between sites, four different contact networks of transportation vehicles (vehicles that transport pigs from farm-to-farm, pigs to markets, feed distribution and crew), the volume of animal by-products within feed diets (e.g. animal fat and meat and bone meal) to reproduce PEDV transmission dynamics. The model was calibrated in space and time with weekly PEDV outbreaks. We investigated the model performance to identify outbreak locations and the contribution of each route in the dissemination of PEDV. The model estimated that 42.7% of the infections in sow farms were related to vehicles transporting feed, 34.5% of infected nurseries were associated with vehicles transporting pigs to farms, and for both farm types, pig movements or local transmission were the next most relevant routes. On the other hand, finishers were most often (31.4%) infected via local transmission, followed by the vehicles transporting feed and pigs to farm networks. Feed ingredients did not significantly improve model calibration metrics. The proposed modeling framework provides an evaluation of PEDV transmission dynamics, ranking the most important routes of PEDV dissemination and granting the swine industry valuable information to focus efforts and resources on the most important transmission routes.

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