论文标题

Shannon的熵,用于随时间变化的细胞迁移

Shannon Entropy for Time-Varying Persistence of Cell Migration

论文作者

Liu, Yanping, Jiao, Yang, Fan, Qihui, Li, Guoqiang, Yao, Jingru, Wang, Gao, Lou, Silong, Chen, Guo, Shuai, Jianwei, Liu, Liyu

论文摘要

细胞迁移可以显着受细胞内信号通路(ICSP)和细胞外基质(ECM)的影响,在许多生理和病理过程中起着至关重要的作用。细胞迁移的效率通常被建模为持续的随机步行(PRW),取决于两个关键运动参数,即迁移速度和持久性。从嘈杂的实验数据中有效,准确地提取这些关键动力学参数通常是非常具有挑战性的。在这里,我们采用了归一化的香农熵来量化细胞迁移动力学与扩散/弹道运动的偏差,并根据迁移速度的傅立叶功率谱系来得出细胞迁移的持久性。此外,我们根据细胞动力学的小波功率谱引入时间变化的香农熵,并证明了其优越的效用,以表征细胞迁移的时间依赖性持久性,这通常是由复杂的和时间变化的内部内部或细胞外机制引起的。我们采用我们的方法来分析体外细胞迁移的轨迹数据,该数据由不同的细胞内和细胞外机制调节,表现出丰富的动态特征。我们的分析表明,香农熵和小波变换的组合提供了一种简单有效的工具,可以估计细胞迁移的持续性,这也可能在某种程度上反映了ICSP-ECM的实时效应。

Cell migration, which can be significantly affected by intracellular signaling pathways (ICSP) and extracellular matrix (ECM), plays a crucial role in many physiological and pathological processes. The efficiency of cell migration, which is typically modeled as a persistent random walk (PRW), depends on two critical motility parameters, i.e., migration speed and persistence. It is generally very challenging to efficiently and accurately extract these key dynamics parameters from noisy experimental data. Here, we employ the normalized Shannon entropy to quantify the deviation of cell migration dynamics from that of diffusive/ballistic motion as well as to derive the persistence of cell migration based on the Fourier power spectrum of migration velocities. Moreover, we introduce the time-varying Shannon entropy based on the wavelet power spectrum of cellular dynamics and demonstrate its superior utility to characterize the time-dependent persistence of cell migration, which is typically resulted from complex and time-varying intra or extra-cellular mechanisms. We employ our approach to analyze trajectory data of in vitro cell migration regulated by distinct intracellular and extracellular mechanisms, exhibiting a rich spectrum of dynamic characteristics. Our analysis indicates that the combination of Shannon entropy and wavelet transform offers a simple and efficient tool to estimate the persistence of cell migration, which may also reflect the real-time effects of ICSP-ECM to some extent.

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