论文标题
十种催化酶增强扩散的主曲线
Master curve of boosted diffusion for ten catalytic enzymes
论文作者
论文摘要
据报道,分子搅拌比热布朗运动更快地是针对细胞环境,运动蛋白,合成分子电机,酶和常见的化学反应的,但是化学活性伴侣与分子运动的对比与对平衡时扩散的积累的代数相反。为了测试这一想法的极限,关键的测试床是催化活性酶的迁移率。关于增强的酶扩散的现实和反对的证据,情绪是分歧。在这里,主曲线表明,酶扩散系数与能量释放速率成比例增加,迈克尔斯 - 门en反应速率和吉布斯自由能的乘积,高度令人满意的相关系数为0.97。对于十种催化酶(尿素酶,乙酰胆碱酯酶,来自葡萄糖级联周期的7种酶,另一种酶),我们的测量值从大约40%的高40%增强的扩散系数在高离职率和负Gibbs的自由能量下,在缓慢的离职速度和正gibbs Free能量下无增强。此外,只要避免了不良的荧光辐射物质,两种独立的迁移率指标表明一致性。这里提出的主曲线量化了这两种思想的局限性,即酶显示出增强的扩散,并且它们不在工具分辨率之内,并且可能对理解细胞环境中的酶迁移率有可能。特殊酶(负Gibbs自由能)以及终结酶的消失效果(正gibbs自由能)的显着线性依赖性与物理图片一致,在物理图中,利用化学反应中可用的工作,可以提高扩散的机制是活跃的。
Molecular agitation more rapid than thermal Brownian motion is reported for cellular environments, motor proteins, synthetic molecular motors, enzymes, and common chemical reactions, yet that chemical activity couples to molecular motion contrasts with generations of accumulated knowledge about diffusion at equilibrium. To test the limits of this idea, a critical testbed is mobility of catalytically active enzymes. Sentiment is divided about reality of enhanced enzyme diffusion with evidence for and against. Here a master curve shows that enzyme diffusion coefficient increases in proportion to the energy release rate, the product of Michaelis-Menten reaction rate and Gibbs free energy change with the highly satisfactory correlation coefficient of 0.97. For ten catalytic enzymes (urease, acetylcholinesterase, seven enzymes from the glucose cascade cycle, and another), our measurements span from roughly 40% enhanced diffusion coefficient at high turnover rate and negative Gibbs free energy to no enhancement at slow turnover rate and positive Gibbs free energy. Moreover, two independent measures of mobility show consistency, provided that one avoids undesirable fluorescence photophysics. The master curve presented here quantifies the limits of both ideas, that enzymes display enhanced diffusion and that they do not within instrumental resolution, and has possible implications for understanding enzyme mobility in cellular environments. The striking linear dependence for the exergonic enzymes (negative Gibbs free energy) together with the vanishing effect for endergonic enzyme (positive Gibbs free energy) are consistent with a physical picture where the mechanism boosting the diffusion is an active one, utilizing the available work from the chemical reaction.