论文标题

使用多模式3D U-NET的全自动椎间盘分割

Fully Automatic Intervertebral Disc Segmentation Using Multimodal 3D U-Net

论文作者

Wang, Chuanbo, Guo, Ye, Chen, Wei, Yu, Zeyun

论文摘要

椎间盘(IVD)作为位于相邻椎骨之间的小关节,在压力缓冲和组织保护中起着重要作用。文献中已经讨论了IVD的完全自动的定位和分割,因为它们对于脊柱疾病诊断至关重要,并提供了治疗中的定量参数。传统上手工制作的特征是根据图像强度和塑造先验来定位和分段IVD的。随着深度学习的发展,各种神经网络模型在图像分析中取得了巨大的成功,包括对椎间盘的识别。特别是,由于其在生物医学图像上的出色表现和相对较小的培训数据,因此U-NET在其他方法中脱颖而出。本文提出了一个基于3D U-NET的新型卷积框架,以从多模式MRI图像进行分段IVD。我们首先将每个脊柱样品中的椎间盘的中心定位,然后根据以局部椎间盘为中心的裁剪小体积来训练网络。提出了使用多种模式的各种组合对结果进行详细的综合分析。此外,在2D和3D U-NET上进行了具有增强和非增强数据集的实验,并根据骰子系数和Hausdorff距离进行了比较。我们的方法已被证明是有效的,平均分割骰子系数为89.0%,标准偏差为1.4%。

Intervertebral discs (IVDs), as small joints lying between adjacent vertebrae, have played an important role in pressure buffering and tissue protection. The fully-automatic localization and segmentation of IVDs have been discussed in the literature for many years since they are crucial to spine disease diagnosis and provide quantitative parameters in the treatment. Traditionally hand-crafted features are derived based on image intensities and shape priors to localize and segment IVDs. With the advance of deep learning, various neural network models have gained great success in image analysis including the recognition of intervertebral discs. Particularly, U-Net stands out among other approaches due to its outstanding performance on biomedical images with a relatively small set of training data. This paper proposes a novel convolutional framework based on 3D U-Net to segment IVDs from multi-modality MRI images. We first localize the centers of intervertebral discs in each spine sample and then train the network based on the cropped small volumes centered at the localized intervertebral discs. A detailed comprehensive analysis of the results using various combinations of multi-modalities is presented. Furthermore, experiments conducted on 2D and 3D U-Nets with augmented and non-augmented datasets are demonstrated and compared in terms of Dice coefficient and Hausdorff distance. Our method has proved to be effective with a mean segmentation Dice coefficient of 89.0% and a standard deviation of 1.4%.

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