论文标题
核糖体生物发生的生长法律和不变性。
Growth-laws and invariants from ribosome biogenesis in lower Eukarya
论文作者
论文摘要
真核生物和细菌是生命中最遥远的域名,其细胞结构和生理学的差异反映了。例如,真核生物具有膜结合的细胞器,例如核和线粒体,而细菌却没有。真核病的较高复杂性使它们难以从实验和理论的角度研究。然而,由于最近的实验结果表明,萌芽的酵母(单细胞真核生物)服从核糖体蛋白质组馏分与细菌与细菌的相同比例,我们得出了一组描述核糖体生物发生原理真核生物生长的关系。我们恢复观察到的核糖体蛋白质比例,然后继续获得两个生长法,以使细胞中每个核糖体合成RNA聚合酶的数量合成核糖体RNA。这些增长法反过来揭示了真核增长的两个不变性,即无论生长条件如何,被真菌保守的数量。不变的人是核糖体生物发生要求的转录和翻译动力学的配位,并将这些动力学参数与细胞生理学联系起来。我们证明了将关系应用于酵母菌S.酿酒酵母,并发现预测与当前可用的数据非常吻合。然后,我们概述了定量推断出几种未知动力学和生理参数的方法。该分析不是特定于酿酒酵母的特异性,当数据可用时,可以扩展到其他下部(单细胞)Eukarya。该关系也可能与某些癌细胞相关,这些癌细胞(如细菌和酵母)都表现出快速的细胞增殖和核糖体生物发生。
Eukarya and Bacteria are the most evolutionarily distant domains of life, which is reflected by differences in their cellular structure and physiology. For example, Eukarya feature membrane-bound organelles such as nuclei and mitochondria, whereas Bacteria have none. The greater complexity of Eukarya renders them difficult to study from both an experimental and theoretical perspective. However, encouraged by a recent experimental result showing that budding yeast (a unicellular eukaryote) obeys the same proportionality between ribosomal proteome fractions and cellular growth rates as Bacteria, we derive a set of relations describing eukaryotic growth from first principles of ribosome biogenesis. We recover the observed ribosomal protein proportionality, and then continue to obtain two growth-laws for the number of RNA polymerases synthesizing ribosomal RNA per ribosome in the cell. These growth-laws, in turn, reveal two invariants of eukaryotic growth, i.e. quantities predicted to be conserved by Eukarya regardless of growth conditions. The invariants, which are the first of their kind for Eukarya, clarify the coordination of transcription and translation kinetics as required by ribosome biogenesis, and link these kinetic parameters to cellular physiology. We demonstrate application of the relations to the yeast S. cerevisiae and find the predictions to be in good agreement with currently available data. We then outline methods to quantitatively deduce several unknown kinetic and physiological parameters. The analysis is not specific to S. cerevisiae and can be extended to other lower (unicellular) Eukarya when data become available. The relations may also have relevance to certain cancer cells which, like bacteria and yeast, exhibit rapid cell proliferation and ribosome biogenesis.