论文标题
Revphiseg:用于医学图像分割中不确定性定量的记忆效率神经网络
RevPHiSeg: A Memory-Efficient Neural Network for Uncertainty Quantification in Medical Image Segmentation
论文作者
论文摘要
由于解剖结构及其病理的固有歧义,量化分割不确定性已成为医学图像分析中的重要问题。最近,基于神经网络的不确定性定量方法已成功地应用于各种问题。现有技术的主要局限性之一是训练期间的高内存要求;这将其应用限制为处理较小的视野(FOV)和/或使用较浅的体系结构。在本文中,我们研究了使用可逆块来构建记忆有效的神经网络体系结构来量化分割不确定性的效果。可逆体系结构通过精确计算反向传播过程中后续层的输出的激活而不是存储每一层激活的激活来实现内存节省。我们将可逆块纳入了一个名为Phiseg的最近提议的体系结构中,该结构是为医学图像分割中的不确定性定量而开发的。可逆体系结构Revphiseg允许培训神经网络,以有限的内存和处理更大的FOV来量化GPU的分割不确定性。我们在LIDC-IDRI数据集和内部前列腺数据集上执行实验,并与Phiseg进行比较。结果表明,与Phiseg相比,Revphiseg消耗的记忆力少约30%,同时达到非常相似的细分精度。
Quantifying segmentation uncertainty has become an important issue in medical image analysis due to the inherent ambiguity of anatomical structures and its pathologies. Recently, neural network-based uncertainty quantification methods have been successfully applied to various problems. One of the main limitations of the existing techniques is the high memory requirement during training; which limits their application to processing smaller field-of-views (FOVs) and/or using shallower architectures. In this paper, we investigate the effect of using reversible blocks for building memory-efficient neural network architectures for quantification of segmentation uncertainty. The reversible architecture achieves memory saving by exactly computing the activations from the outputs of the subsequent layers during backpropagation instead of storing the activations for each layer. We incorporate the reversible blocks into a recently proposed architecture called PHiSeg that is developed for uncertainty quantification in medical image segmentation. The reversible architecture, RevPHiSeg, allows training neural networks for quantifying segmentation uncertainty on GPUs with limited memory and processing larger FOVs. We perform experiments on the LIDC-IDRI dataset and an in-house prostate dataset, and present comparisons with PHiSeg. The results demonstrate that RevPHiSeg consumes ~30% less memory compared to PHiSeg while achieving very similar segmentation accuracy.