论文标题
基于本体的COVID-19表型的注释和分析
Ontology-based annotation and analysis of COVID-19 phenotypes
论文作者
论文摘要
Covid-19的流行造成了世界各地不同领土上的公共卫生的不可预测和破坏性的灾难。常见的表型包括发烧,咳嗽,呼吸急促和发冷。随着更多病例的研究,其他临床表型逐渐被识别出,例如,气味丧失和口味丧失。与出院或治愈的患者相比,严重或死亡的患者通常患有一种或多种合并症,例如高血压,糖尿病和心血管疾病。在这项研究中,我们从70篇文章中系统地收集和分析了与19个相关的临床表型。通常,发生的17个表型根据人类表型(HPO)分为不同的组。基于HP分类,我们系统地分析了三种神经表型(气味丧失,味觉丧失和头痛)和四种腹部表型(恶心,呕吐,腹痛和腹泻)在患者中鉴定出来,并发现来自欧洲和美国的患者与来自ASIA的患者相比,欧洲和美国的患者变成更高的神经表型和腹部表型。在199例患者中,通常发现共有23种合并症。与没有这些合并症的患者相比,患有糖尿病和肾衰竭等合并症的患者的结果较差。
The epidemic of COVID-19 has caused an unpredictable and devastated disaster to the public health in different territories around the world. Common phenotypes include fever, cough, shortness of breath, and chills. With more cases investigated, other clinical phenotypes are gradually recognized, for example, loss of smell, and loss of tastes. Compared with discharged or cured patients, severe or died patients often have one or more comorbidities, such as hypertension, diabetes, and cardiovascular disease. In this study, we systematically collected and analyzed COVID-19-related clinical phenotypes from 70 articles. The commonly occurring 17 phenotypes were classified into different groups based on the Human Phenotype Ontology (HPO). Based on the HP classification, we systematically analyze three nervous phenotypes (loss of smell, loss of taste, and headache) and four abdominal phenotypes (nausea, vomiting, abdominal pain, and diarrhea) identified in patients, and found that patients from Europe and USA turned to have higher nervous phenotypes and abdominal phenotypes than patients from Asia. A total of 23 comorbidities were found to commonly exist among COVID-19 patients. Patients with these comorbidities such as diabetes and kidney failure had worse outcomes compared with those without these comorbidities.