论文标题

图理论的洞察力关于肌动球蛋白网络的形态学的见解

Insights from Graph Theory on the Morphologies of Actomyosin Networks with Multilinkers

论文作者

Eliaz, Yossi, Nedelec, Francois, Morrison, Greg, Levine, Herbert, Cheung, Margaret S.

论文摘要

在许多与生物学相关的环境中,量化微观细节对丝状网络整体结构发展动力学的影响很重要,但是尚不清楚哪些顺序参数可用于充分描述这一复杂过程。在本文中,我们研究了多价肌动蛋白结合蛋白(ABP)在通过半辅助细丝的计算机模型中重组肌动蛋白细丝到高阶复合网络中的作用。我们表征了肌动蛋白丝之间局部连通性以及肌动蛋白网络的全球特征的重要性。我们首先将网络映射到本地图表示中,然后使用网络理论顺序参数的原理,结合这些表示的属性,以深入了解全球级别的Actomyosin网络的异质形态。我们发现,价值超过两个的ABP促进灯丝束和大型灯丝簇的程度要比二价多键符得多。我们还表明,活跃的肌球蛋白样运动蛋白促进了肌动蛋白束的茎形成树突分支的形成。我们的工作激发了未来的研究将网络理论作为一种工具,是一种通过实验检测到的肌动蛋白的复杂形态的工具,从而定量了解ABP在将肌动蛋白丝的自组装中的作用中的作用中进行了定量理解,这些结构是独特的构造,这些体系结构是与其移动性和形状相关的细胞结构支架的基础。

Quantifying the influence of microscopic details on the dynamics of development of the overall structure of a filamentous network is important in a number of biologically relevant contexts, but it is not obvious what order parameters can be used to adequately describe this complex process. In this paper, we investigated the role of multivalent actin-binding proteins (ABPs) in reorganizing actin filaments into higher-order complex networks via a computer model of semiflexible filaments. We characterize the importance of local connectivity among actin filaments as well as the global features of actomyosin networks. We first map the networks into local graph representations and then, using principles from network-theory order parameters, combine properties from these representations to gain insight on the heterogeneous morphologies of actomyosin networks at a global level. We find that ABPs with a valency greater than two promote filament bundles and large filament clusters to a much greater extent than bivalent multilinkers. We also show that active myosin-like motor proteins promote the formation of dendritic branches from a stalk of actin bundles. Our work motivates future studies to embrace network theory as a tool to characterize complex morphologies of actomyosin detected by experiments, leading to a quantitative understanding of the role of ABPs in manipulating the self-assembly of actin filaments into unique architectures that underlie the structural scaffold of a cell relating to its mobility and shape.

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