论文标题
基于2.5 d残留挤压和激发深度学习模型,在晚期加多丹增强MRI上的心肌分割
Segmentation of the Myocardium on Late-Gadolinium Enhanced MRI based on 2.5 D Residual Squeeze and Excitation Deep Learning Model
论文作者
论文摘要
注射造影剂(LGE-MRI)后10分钟获得的短轴MRI的心脏左心室(LV)分割是加工的必要步骤,允许鉴定和诊断心肌梗死等心脏疾病。但是,由于受试者之间的差异很高以及结构之间的对比度不足,因此这种细分面临着挑战。然后,这项工作的主要目的是基于LGE-MRI上的心肌边界的深度学习模型开发一种准确的自动分割方法。为此,已经提出了与专门卷积的编码器一侧挤压和激发块集成的2.5 d残留神经网络。晚期融合已被用来合并不同训练训练的模型,这些模型来自不同的超参数。总共320次考试(平均每次检查6片)进行培训,并使用28次考试进行测试。与观察者内部研究相比,基础和中间切片中提出的集合模型的性能分析相似,而在顶部切片处则略低。通过我们提出的方法,与从观察者内部研究中获得的83.22%的骰子得分为83.22%,总骰子得分为82.01%。所提出的模型可用于自动分割心肌边界,这是准确量化无反流,心肌梗死,心肌炎和肥厚性心肌病等非常重要的一步。
Cardiac left ventricular (LV) segmentation from short-axis MRI acquired 10 minutes after the injection of a contrast agent (LGE-MRI) is a necessary step in the processing allowing the identification and diagnosis of cardiac diseases such as myocardial infarction. However, this segmentation is challenging due to high variability across subjects and the potential lack of contrast between structures. Then, the main objective of this work is to develop an accurate automatic segmentation method based on deep learning models for the myocardial borders on LGE-MRI. To this end, 2.5 D residual neural network integrated with a squeeze and excitation blocks in encoder side with specialized convolutional has been proposed. Late fusion has been used to merge the output of the best trained proposed models from a different set of hyperparameters. A total number of 320 exams (with a mean number of 6 slices per exam) were used for training and 28 exams used for testing. The performance analysis of the proposed ensemble model in the basal and middle slices was similar as compared to intra-observer study and slightly lower at apical slices. The overall Dice score was 82.01% by our proposed method as compared to Dice score of 83.22% obtained from the intra observer study. The proposed model could be used for the automatic segmentation of myocardial border that is a very important step for accurate quantification of no-reflow, myocardial infarction, myocarditis, and hypertrophic cardiomyopathy, among others.