论文标题
模块化在生物网络中自组织动力学中的作用
The role of modularity in self-organisation dynamics in biological networks
论文作者
论文摘要
生物实体的互连集合可能是迄今为止现代科学遇到的一些最复杂的系统。特别是,科学家专注于理解不同神经元,蛋白质或物种之间相互作用结构的复杂性如何影响其各自系统的功能。建立了许多生物网络以高度层次的方式构建的,具有两个主要特性:较短的平均路径与两个明显远的节点(神经元,物种或蛋白质斑块)和模块化聚集中的淋巴结高比例。尽管到目前为止已经提出了一些假设,但对于这些生物系统中的动态活性的关系仍然知之甚少。在这里,我们表明网络模块化是形成功能活动自组织模式的关键要素,而与模块结构的拓扑特殊性无关。特别是,我们提出了一种自组织机制,该机制解释了宏观空间模式的形成,这些模式在模块中是均匀的。这可以解释生物网络中的自发秩序如何遵循其模块化结构组织。我们在现实世界网络上测试结果,以确认模块化在创建宏观尺度模式中的重要作用。
Interconnected ensembles of biological entities are perhaps some of the most complex systems that modern science has encountered so far. In particular, scientists have concentrated on understanding how the complexity of the interacting structure between different neurons, proteins or species influences the functioning of their respective systems. It is well-established that many biological networks are constructed in a highly hierarchical way with two main properties: short average paths that join two apparently distant nodes (neuronal, species, or protein patches) and a high proportion of nodes in modular aggregations. Although several hypotheses have been proposed so far, still little is known about the relation of the modules with the dynamical activity in such biological systems. Here we show that network modularity is a key ingredient for the formation of self-organising patterns of functional activity, independently of the topological peculiarities of the structure of the modules. In particular, we propose a self-organising mechanism which explains the formation of macroscopic spatial patterns, which are homogeneous within modules. This may explain how spontaneous order in biological networks follows their modular structural organisation. We test our results on real-world networks to confirm the important role of modularity in creating macro-scale patterns.