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The design of permissioned blockchains places an access control requirement for members to read, access, and write information over the blockchains. In this paper, we study a hierarchical scenario to include three types of participants: providers, collectors, and governors. To be specific, providers forward transactions, collected from terminals, to collectors; collectors upload received transactions to governors after verifying and labeling them; and governors validate a part of received labeled transactions, pack valid ones into a block, and append a new block on the ledger. Collectors in the hierarchical model play a crucial role in the design: they have connections with both providers and governors, and are responsible for collecting, verifying, and uploading transactions. However, collectors are rational and some of them may behave maliciously (not necessarily for their own benefits). In this paper, we introduce a reputation protocol as a measure of the reliability of collectors in the permissioned blockchain environment. Its objective is to encourage collectors to behave truthfully and, in addition, to reduce the verification cost. The verification cost on provider $p$ is defined as the total number of invalid transactions provided by $p$ and checked by governors. Through theoretical analysis, our protocol with the reputation mechanism has a significant improvement in efficiency. Specifically, the verification loss that governors suffer is proved to be asymptotically $O(\sqrt{T_{total}})$ ($T_{total}$, representing the number of transactions verified by governors and provided by $p$), as long as there exists at least one collector who behaves well. At last, two typical cases where our model can be well applied are also demonstrated.