论文标题

OpenHi2-开源组织病理学图像平台

OpenHI2 -- Open source histopathological image platform

论文作者

Puttapirat, Pargorn, Zhang, Haichuan, Deng, Jingyi, Dong, Yuxin, Shi, Jiangbo, He, Hongyu, Gao, Zeyu, Wang, Chunbao, Zhang, Xiangrong, Li, Chen

论文摘要

从常规病理学到数字病理学的过渡需要新的生物医学信息基础设施,这可以促进精致的病理常规。病理诊断对许多外部因素敏感,并且已知是主观的。只有能够满足病理学要求的严格要求的系统才能沿着病理惯例运行并最终将研究领域数字化,并且开发的平台应遵守现有的病理常规和国际标准。当前,有许多可用的软件工具可以执行组织病理学任务,包括虚拟幻灯片查看,注释和基本图像分析,但是,它们都无法用作病理学的数字平台。在这里,我们描述了OpenHi2,这是一种增强版本的Open Hastotological Imagal图像平台,能够支持所有基本的病理任务和文件格式;准备在标准服务器环境或云计算基础架构上部署在医疗机构中。在本文中,我们还描述了该平台的开发决策,并提出了解决技术挑战的解决方案,以便可以将OpenHi2用作组织病理学图像的平台。由于每个组件是模块化的并充分记录的,因此可以在平台上进一步添加。 OpenHi2是免费的,开源的,可在https://gitlab.com/bioai/openhi上找到。

Transition from conventional to digital pathology requires a new category of biomedical informatic infrastructure which could facilitate delicate pathological routine. Pathological diagnoses are sensitive to many external factors and is known to be subjective. Only systems that can meet strict requirements in pathology would be able to run along pathological routines and eventually digitized the study area, and the developed platform should comply with existing pathological routines and international standards. Currently, there are a number of available software tools which can perform histopathological tasks including virtual slide viewing, annotating, and basic image analysis, however, none of them can serve as a digital platform for pathology. Here we describe OpenHI2, an enhanced version Open Histopathological Image platform which is capable of supporting all basic pathological tasks and file formats; ready to be deployed in medical institutions on a standard server environment or cloud computing infrastructure. In this paper, we also describe the development decisions for the platform and propose solutions to overcome technical challenges so that OpenHI2 could be used as a platform for histopathological images. Further addition can be made to the platform since each component is modularized and fully documented. OpenHI2 is free, open-source, and available at https://gitlab.com/BioAI/OpenHI.

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